Protein Info for Psest_4252 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07007: LprI" amino acids 33 to 129 (97 residues), 51.1 bits, see alignment E=7.5e-18

Best Hits

KEGG orthology group: None (inferred from 67% identity to pmy:Pmen_0112)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRS7 at UniProt or InterPro

Protein Sequence (136 amino acids)

>Psest_4252 Uncharacterized protein conserved in bacteria (Pseudomonas stutzeri RCH2)
MFNSRTISLIFLILFVRTALSDDVSNPCKEIEASSQIALCAQYNKEQSDALLNSSYKATL
NRIRLQYRNSPLLADQYISLLKTAQREWIDLRDADCKLEAFEIEETAEAYQVTIDNCIAK
MSDDRADYLNRIAPDI