Protein Info for Psest_4234 in Pseudomonas stutzeri RCH2

Annotation: Acyl-CoA dehydrogenases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 PF02771: Acyl-CoA_dh_N" amino acids 6 to 121 (116 residues), 69.6 bits, see alignment E=4.6e-23 PF02770: Acyl-CoA_dh_M" amino acids 125 to 219 (95 residues), 77.6 bits, see alignment E=1e-25 PF00441: Acyl-CoA_dh_1" amino acids 231 to 395 (165 residues), 73.7 bits, see alignment E=2.9e-24

Best Hits

KEGG orthology group: None (inferred from 98% identity to psa:PST_0100)

MetaCyc: 55% identical to pimeloyl-CoA dehydrogenase large subunit (Rhodopseudomonas palustris)
Pimeloyl-CoA dehydrogenase. [EC: 1.3.1.62]

Predicted SEED Role

"Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)" (EC 1.3.99.13)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.3.1.62 or 1.3.99.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GTT1 at UniProt or InterPro

Protein Sequence (398 amino acids)

>Psest_4234 Acyl-CoA dehydrogenases (Pseudomonas stutzeri RCH2)
MNVNYTAEELAFRDEVRAFLKSELPADIAAKVKLGKHMSKQDHERWQQILVKRGWYAPGW
PVELGGTTWGPVEKHIFDEECSAFGAPRTVPFGVNMVAPVIIKFGTQQQIDHYLPRILSG
EDWWCQGYSEPGAGSDLASLKTRAVRDGDHYVVNGQKTWTTLGQHANMIFCLVRTDPEAQ
QQRGISFLLIDMKSPGISVRPIITLDGDHEVNEVFFDNVRVPVENLVGEENQGWTCAKYL
LTHERTGLAGIGSSKAVLAHLKRIAMKEVCDGKPMLEDPLFRAQVAEVEMQLMAIEMSTL
RILAAAKEGGVPGAESSILKVKGTEIRQAITHLLRKVIGPYALPFLEEEMQLDYDGELLH
ADYSASLAGDYFNMRKLSIFGGSNEIQKNIVSKMILEL