Protein Info for Psest_4230 in Pseudomonas stutzeri RCH2

Annotation: Transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00440: TetR_N" amino acids 10 to 56 (47 residues), 48.4 bits, see alignment E=3.2e-17

Best Hits

KEGG orthology group: None (inferred from 98% identity to psa:PST_0104)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GTJ0 at UniProt or InterPro

Protein Sequence (192 amino acids)

>Psest_4230 Transcriptional regulator (Pseudomonas stutzeri RCH2)
MARSSRKQEILQAALACFTEFGVEATTIEMIRDRSGASIGSLYHHFGNRERIIAALYLEG
IGEYAALLEAGLIETLDAEACVRLFVTSYIDWVVANPDWARFVLHNRGRVEAGEMGEQLR
EVNRTHGERVGAILRRHRESGAFRRMPGDCFLAVVIGPCHDMARNWLAGRSRTALADCRE
LLADIAWASVRA