Protein Info for HP15_4097 in Marinobacter adhaerens HP15

Annotation: inner-membrane translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 transmembrane" amino acids 24 to 40 (17 residues), see Phobius details amino acids 43 to 64 (22 residues), see Phobius details amino acids 69 to 91 (23 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details amino acids 256 to 283 (28 residues), see Phobius details amino acids 288 to 330 (43 residues), see Phobius details PF02653: BPD_transp_2" amino acids 50 to 320 (271 residues), 134.9 bits, see alignment E=1.5e-43

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 66% identity to dar:Daro_2358)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PLS4 at UniProt or InterPro

Protein Sequence (347 amino acids)

>HP15_4097 inner-membrane translocator (Marinobacter adhaerens HP15)
MRIGDAKQSYEADEAIWTSQTQKLWLGFFLLILLVFPFVVDSYLLYLGCLVGIAVISTTG
LNILTGFTGLISLGQAGFMGVGAYTVAWLSINTALPFPVTLVLAGLMAAAVGILVGLPSL
RVKGLYLAIATLAASVFLHFIFAEWESVTGGMGGLSLEPAHLFGLTFQSDFMMYFIIVPL
AVLMVLAARNVFRTRIGRAFIAIRDRDISAEILGINLLRYKLMSFALSSFYAGIAGGLFA
YFYRVVTPESFPLSMSIFYLAAVIVGGMGNLLGGILGAAFMTLVPEALKLLTAALTPFYP
NAPVFMSPMLEIIFGALIVGFLIFEPHGLAEIWHRIRRFFRLWPFRN