Protein Info for Psest_4215 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 893 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 549 to 565 (17 residues), see Phobius details PF20249: VasX_N" amino acids 21 to 156 (136 residues), 56.1 bits, see alignment E=2.5e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GTH4 at UniProt or InterPro

Protein Sequence (893 amino acids)

>Psest_4215 hypothetical protein (Pseudomonas stutzeri RCH2)
MTGQTSAPPSLTVAGCPLLSAVLPLRYALGPTLTVDTSAYSLPPVQGDFPAIGDYFESLK
GRSLNYTARLLRDGWLYVWQSGQRQLIEYRVRAAAFTQTARGGKVIDSRSLPYLLLPAGV
PAMLAWSPCQWSDSQYAAAKGKGEVRQRVMRTITPGTAPFSGPARTIHERIGDYMDSDWY
GWSCEPSTSHRPAWPKLLDDMQRCEQQAYALIDDPWGILLDLANLLRARQQSFKVIREVH
GEDWAVAGVLKSLAEGDPQIGGQLRSITNYRKLQATWQQQTQEEEAYSGDVRRLSVLWSA
WLNTLGQRGPASLDTACGHFDITQPEPRAELELHFAAACLGPASTGPGANATANALTLQQ
REGKPWLVWALLGLGKRLGVGEINSLVALADGVRDNGAGALNEAHKLAQLLNQAADKLGR
HILASPLEALFTALAPVVGLGLQKADDGSKAAGRLYLAAALARSQQRLAVEAVSQRQLGE
WMSDLMGTRPKLPAGLKPTILSVAISDALPFFRLLPAKDLPPLPTYLTSDVNLKGMLDLG
KGALEKAPIKCVVALVAGVNFIWGGLQLTDKQSGKNWLSFVGGSFGASTAIAATLQKVAE
VDWEATVKINGAGHIASQKALADALGVGAKASILQSVTSGFDVLVYGIEAFEAYKVGDVD
TAAINAGLTLASTANLQLYVQSFRAIRAARAAVIAGEAAVISRGVSVAPHLAARALGWTI
LIVGGVIARQYTQDTPLETWVKGTRFGTRPADWSSSYGKSMTEFYKVVFPISFEAYRINE
LNPYRGMQTITYVLLRLPGKSALTDDMIHFKGHETWGSFFGFGGTRKAVEWTGKDFDHHG
GTRVRPEPGVAIYRRVYHENNGEKFDAIRGELSYSPVEGLTLPPVEIKELAWL