Protein Info for HP15_4069 in Marinobacter adhaerens HP15

Annotation: binding-protein-dependent transport systems inner membrane component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 14 to 38 (25 residues), see Phobius details amino acids 83 to 101 (19 residues), see Phobius details amino acids 113 to 137 (25 residues), see Phobius details amino acids 158 to 179 (22 residues), see Phobius details amino acids 200 to 225 (26 residues), see Phobius details amino acids 258 to 278 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 103 to 276 (174 residues), 30.3 bits, see alignment E=1.7e-11

Best Hits

KEGG orthology group: None (inferred from 89% identity to maq:Maqu_0348)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PLP6 at UniProt or InterPro

Protein Sequence (283 amino acids)

>HP15_4069 binding-protein-dependent transport systems inner membrane component (Marinobacter adhaerens HP15)
MIRSVPRSRLFDSLYLAYLVAFFVYLALPLVVTAVFAFNDAPFPSLPWKGFTLDWYFADG
SEGRTGLFHDDGLLTALWVSAKIAFWVTLVSVALGCVNAVLFERVQFRGKEFLYLLMLLP
LVIPGVILGVSILVFYSGMANDVSSAWGIELDLFRPGMTLVVMGQVTFIATLSTLVIAAR
LRKFDPQLEEAALNLGATPLVAWFTVTLPWLLPSIFGAAAMAFLMSFENFNTTVMLTGSD
TPLTVALFNRLREGSTPVLNAVALLLMVGSALLALLVMGRSSR