Protein Info for Psest_4187 in Pseudomonas stutzeri RCH2

Annotation: Predicted permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 35 to 55 (21 residues), see Phobius details amino acids 63 to 86 (24 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 166 to 184 (19 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details PF03547: Mem_trans" amino acids 4 to 304 (301 residues), 103 bits, see alignment E=6.6e-34

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 96% identity to psa:PST_0140)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GS89 at UniProt or InterPro

Protein Sequence (310 amino acids)

>Psest_4187 Predicted permeases (Pseudomonas stutzeri RCH2)
MSSVVNVVLPVFALILLGYLCRRSGRMGPTGASELNRFVVWLGLPALLFSVVATSTWEQL
WQPGFIAAFAIGCLGVFAFTLAYRMLQKQPLVDASLDALGASYANTGYVGIPLCMLVLGD
DALQPAMVASIVVVCVLFAIALACVETGLHAGQGLLRTLGKVSSALVRNPLVIAPLLGAL
WAASGLQLPVPLATLLKLLGAAAAPCALVSLGLFLAQPQPGGKVQGVWPLVGLKLVVQPL
ITWYLAFQVFELPTLWAYSALLLSALPTGTGPYMLAEFYGREGSRVSRVVLLSTLGSLIT
LSLILVLLPV