Protein Info for Psest_4186 in Pseudomonas stutzeri RCH2

Annotation: Methylase of polypeptide chain release factors

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 PF05175: MTS" amino acids 127 to 215 (89 residues), 60 bits, see alignment E=9.6e-20 PF03602: Cons_hypoth95" amino acids 130 to 213 (84 residues), 30.4 bits, see alignment E=1.3e-10 PF06325: PrmA" amino acids 132 to 207 (76 residues), 35.8 bits, see alignment E=2.6e-12 PF13847: Methyltransf_31" amino acids 137 to 209 (73 residues), 41.2 bits, see alignment E=5.5e-14 PF13649: Methyltransf_25" amino acids 138 to 210 (73 residues), 35.9 bits, see alignment E=4.2e-12 PF08241: Methyltransf_11" amino acids 139 to 207 (69 residues), 26.2 bits, see alignment E=4.1e-09 PF08242: Methyltransf_12" amino acids 139 to 207 (69 residues), 33.4 bits, see alignment E=2.5e-11

Best Hits

KEGG orthology group: None (inferred from 88% identity to psa:PST_0141)

Predicted SEED Role

"HemK family modification methylase PA2179"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRM4 at UniProt or InterPro

Protein Sequence (315 amino acids)

>Psest_4186 Methylase of polypeptide chain release factors (Pseudomonas stutzeri RCH2)
MTMENAQDRALLHLGQALRDRGYHFITPTPLTHERVNLRPENALAEDLPGVFGWSRPFQH
ELLPPPLFSLMDQAAVLEAHGSRWRSKVRLSSLDGQLFLHSAFPTEASDAVFFGPDTYRF
ASAIRCHLNQHAGEIRRVVDIGCGSGAGAILTALARPQAEVLAVDINPQALRLTRINAAL
ARVDNLRTEHSDLLSNAQGEFDLVLANPPYLVDADQRAYRHGGGPLGAGLSLAILDAALG
RLAPGGTLLLYTGVAMIDNQDPFLAEVRQRLERTDLQWGYREIDPDVFGEELLGGAYTQC
DRIAAVVLEVTRAAS