Protein Info for Psest_4165 in Pseudomonas stutzeri RCH2

Annotation: Flagellar capping protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 PF02465: FliD_N" amino acids 8 to 102 (95 residues), 63.6 bits, see alignment E=2.2e-21 PF07195: FliD_C" amino acids 202 to 416 (215 residues), 169.4 bits, see alignment E=9e-54

Best Hits

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 34% identity to eoj:ECO26_0281)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GTC4 at UniProt or InterPro

Protein Sequence (422 amino acids)

>Psest_4165 Flagellar capping protein (Pseudomonas stutzeri RCH2)
MAIDSNYIKQMSTQLATYEVQSSLDRLNRNESNYKTQRDALSKLRTSLTTFKSAVSGLKT
GKATMLVNSATTSQEGYVSATVGAKAQAGSYQFYVEQLASKQQVAVQGLVDGALSGTLNL
KDQTFNLGAYATLEDAAKAINASADLGVQATLVRSNGEVSLVLTSTESGTANAFAHSLTG
TAATTTTLSTAADARIRMGGSFGVGGIELTSSSNTFDNVIEGVSLSVNKVHKDGDPALTL
TIDQDKSATKGKAQSFVDAFNALMTSFDSLTASGSDSSARGALAGDSSVRAIEGRLNTLL
RTDFGGNSLINFGISADRNGKLTIDTARFEAAVAKDPAGFEALFTGKDNLLDSIDKTVAS
YTSSTNGMLKNRMDTLDMNLRRTNEQFDKLQQQYDSHYSRYLKQFTSMMQTMQNMEQTFG
MF