Protein Info for Psest_4149 in Pseudomonas stutzeri RCH2

Annotation: fagellar hook-basal body proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 TIGR03506: flagellar hook-basal body protein" amino acids 6 to 119 (114 residues), 99.1 bits, see alignment E=2.2e-32 PF00460: Flg_bb_rod" amino acids 6 to 35 (30 residues), 29.3 bits, see alignment 1e-10 PF22692: LlgE_F_G_D1" amino acids 81 to 144 (64 residues), 34.9 bits, see alignment E=2e-12 PF06429: Flg_bbr_C" amino acids 194 to 238 (45 residues), 50.6 bits, see alignment 1.6e-17

Best Hits

KEGG orthology group: K02391, flagellar basal-body rod protein FlgF (inferred from 72% identity to pmy:Pmen_0210)

Predicted SEED Role

"Flagellar basal-body rod protein FlgF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GTK2 at UniProt or InterPro

Protein Sequence (242 amino acids)

>Psest_4149 fagellar hook-basal body proteins (Pseudomonas stutzeri RCH2)
MDRLGYTAMTAASRTMMSLQVRSNNLANVNTPGFRADLERAQAVAVEGYGYDSRHMALIE
NNGVSLAAGPMVATGRELDFAVKGTGLIVLQDGEGEAYTRQGSMQVDAEGRLTLNGRAVL
GEGGPIVLPEYDRMEIGNDGTVSVMAPGDWMMAEVDRIRLVDVPAANLMKNQAGLLVTRD
GEPAQPSEDVRLASGFLESSNVSAIDELASTMSLNRLFETQVKMMKAAEDLSDAGNRMIR
GS