Protein Info for Psest_4123 in Pseudomonas stutzeri RCH2

Annotation: Site-specific recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 PF24624: Int_N" amino acids 62 to 161 (100 residues), 117.9 bits, see alignment E=2.8e-38 PF00589: Phage_integrase" amino acids 170 to 318 (149 residues), 73.8 bits, see alignment E=1.5e-24

Best Hits

KEGG orthology group: None (inferred from 61% identity to pmk:MDS_3187)

Predicted SEED Role

"Probable bacteriophage integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPC1 at UniProt or InterPro

Protein Sequence (352 amino acids)

>Psest_4123 Site-specific recombinase XerD (Pseudomonas stutzeri RCH2)
MGACRLMAILALPDGRWRVDVEPIKGKRFRKTFKTKGEAQRFEATCRSKLIESPQWSPKP
KDRRRLSQLVDCWGRLHGQSLSDYEGRRVIMDRMVERLKDPVAIAFTATDFAEYRAKRLS
SGISPKTLNNELSYLRAMFNELRRLGEIEFENPLSMLRAIRVQERELSCLDSHQIERLFQ
VLRSMVHPHVELIATICLVTGCRWGEAQGLTISRVGDGMLQFVNTKSKRRRVVPIDQKLA
ERIRQHLRQHGAFTNCRDRFDEAVVRAGLGLPAGQKSHVLRHTFASHFIANGGNILTLQK
ILGHSSLAMTMRYAHLAPDHLQDVLAFGPARDFRHFFDTPASERQSGQEIPL