Protein Info for HP15_3985 in Marinobacter adhaerens HP15

Annotation: arginine repressor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 transmembrane" amino acids 45 to 64 (20 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 156 to 175 (20 residues), see Phobius details amino acids 181 to 206 (26 residues), see Phobius details amino acids 210 to 231 (22 residues), see Phobius details amino acids 237 to 258 (22 residues), see Phobius details amino acids 295 to 317 (23 residues), see Phobius details amino acids 323 to 344 (22 residues), see Phobius details amino acids 358 to 377 (20 residues), see Phobius details amino acids 401 to 435 (35 residues), see Phobius details amino acids 454 to 474 (21 residues), see Phobius details amino acids 480 to 504 (25 residues), see Phobius details PF03606: DcuC" amino acids 42 to 500 (459 residues), 400.6 bits, see alignment E=4.1e-124

Best Hits

KEGG orthology group: None (inferred from 82% identity to dsh:Dshi_0431)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PKS7 at UniProt or InterPro

Protein Sequence (505 amino acids)

>HP15_3985 arginine repressor (Marinobacter adhaerens HP15)
MFGFLRFPEGTCLHNAIHERRRIVTEDEKLPENPETDLASRFPTAYTILFGLIILVAALT
WLIPAGQYERAMNEEVGREVAVPGTYQTVDPNPQGFVDVLMAPTAGFYDPDSYVANAIDV
AMFILFLGGFLGVMNATGAIDTGIRSAMRHLKGHEIWMIPILMVLFAIGGTTYGMAEETL
AFYAILIPVILAAGYDAVTGVAIILIGAGIGVLGSTINPFATVIAANAAGIPFTDGIVLR
FILLIGGLLICIGYVMRYAHRVKTDPSRSVVAKQWAAHKKLFLQGGDQEIHSATLTTIQI
IALVIFALTFAVMIWGVSSQGWWMARMGSLFFGAAIVIGIIARLGEKKLTGSFVDGARDL
LGVALVVGLARGIVVIMEQGMIADTILHSAETSLGGLPELAFINLMFWIEVGMSFFVPSS
SGLAVLSMPILAPLADFANVGRDLVVTAYQSANGLVNLINPTFAVVVGGLAIGRVSYDRW
LAFIWPLLLILTVFITVVISVGTLL