Protein Info for Psest_4110 in Pseudomonas stutzeri RCH2

Annotation: Deoxycytidylate deaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 531 PF00383: dCMP_cyt_deam_1" amino acids 255 to 421 (167 residues), 67.6 bits, see alignment E=7.8e-23 PF14437: MafB19-deam" amino acids 285 to 427 (143 residues), 32.8 bits, see alignment E=6.2e-12

Best Hits

Predicted SEED Role

"FIG01203377: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GT75 at UniProt or InterPro

Protein Sequence (531 amino acids)

>Psest_4110 Deoxycytidylate deaminase (Pseudomonas stutzeri RCH2)
MANVSTAARTLTSLGSAKGDILERVEGRRSDEIVAAFCGAVGCNLSDVIRNMRHQFEDYG
YVVEHIKISDIIKQHFQDNPLPPDLASEDLSSLTGIKRYSVLQDLGNHLRQKHGTRVLAA
LAMSRIATHRNIQTKDGKIKAPKTVYIIDQLKHHHEVELFRLVYEDLFYLIGVFSPQRVR
FNHLTKIEQMSGPDALSLIERDRNESASTHGQKLEKTIQLSDYFVCNGQDNSSNLVEPAQ
RFLGLVHGKNGITPTKDEAGMYAAYSASLKSACLSRQVGAAIANKDGNIISVGWNDVPRS
GGGLYTSDSPNDQRCFHHRGFCYNDFHKDRLISSIVDIVGAQLSVTPEIKDKLADLIQKE
TRAGSIIEYSRAIHAEMEAILGLARAQGGSTESSTLYTTTFPCHNCARHIIAAGIKRVVY
IEPYEKSLALDLHDDAITLEEGRTDMTLFENFSGVSPARYASFFLAKGKRKDDKGHAVDI
IKGDAKHIAIKYLDPYQMIETKVVADTLEKMAGSEFSPPHPEDDFTPPGAA