Protein Info for HP15_3918 in Marinobacter adhaerens HP15

Annotation: trap-type mannitol/chloroaromatic compound transport system, large permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 7 to 39 (33 residues), see Phobius details amino acids 52 to 74 (23 residues), see Phobius details amino acids 86 to 129 (44 residues), see Phobius details amino acids 143 to 167 (25 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details amino acids 250 to 268 (19 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details amino acids 321 to 353 (33 residues), see Phobius details amino acids 359 to 388 (30 residues), see Phobius details amino acids 406 to 431 (26 residues), see Phobius details PF06808: DctM" amino acids 11 to 427 (417 residues), 303.2 bits, see alignment E=2.9e-94 TIGR00786: TRAP transporter, DctM subunit" amino acids 21 to 432 (412 residues), 345.3 bits, see alignment E=2.1e-107

Best Hits

KEGG orthology group: None (inferred from 65% identity to rpb:RPB_1293)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PJX2 at UniProt or InterPro

Protein Sequence (436 amino acids)

>HP15_3918 trap-type mannitol/chloroaromatic compound transport system, large permease component (Marinobacter adhaerens HP15)
MSIEALTLLFFGSLLFFLLLGLPLAFVLGGVSVVFLYFTWGFDSFYMVASQIWGTMGSFT
LVAIPLFVFMAMILERTGVARDLYRMMHLWCGGLRGGLALGTLGICAVFAAMVGISGAAV
VAMGTIALPSMLERGYDKSMALGVINTGGGWGILIPPSILMILYALITGVSVGKMFAAGI
MPGVLLMVLTAIYIIVRCHLQPELAPALPKEDRGTWPEKFRALRAVLLPIGVVVMVLGSI
IGGITTPTEAAAMGVLGALISAAVYRQFKWSILKEAAIRTFKLTGMIMWILFAAHAFSAA
YQSMGAQELIEGLMNMVPGGPWGIIIAMMVIVFLLAMVLDPVGIMLITLPVFMPIVESLG
FDPIWFGILFVINMEIGYMTPPFGFNLFYLKGIVPPSITMKDIYKSIIPFVIVEIVGIIL
IMVFPEIATWLPDLLF