Protein Info for PGA1_65p00420 in Phaeobacter inhibens DSM 17395

Annotation: putative ABC type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 75 to 98 (24 residues), see Phobius details amino acids 107 to 131 (25 residues), see Phobius details amino acids 151 to 176 (26 residues), see Phobius details amino acids 187 to 211 (25 residues), see Phobius details amino acids 217 to 236 (20 residues), see Phobius details amino acids 247 to 265 (19 residues), see Phobius details amino acids 273 to 292 (20 residues), see Phobius details PF01061: ABC2_membrane" amino acids 58 to 264 (207 residues), 45.8 bits, see alignment E=2.8e-16

Best Hits

KEGG orthology group: K09688, capsular polysaccharide transport system permease protein (inferred from 49% identity to pde:Pden_2125)

Predicted SEED Role

"STRUCTURAL ELEMENTS; Cell Exterior; surface polysaccharides/antigens"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E6Z0 at UniProt or InterPro

Protein Sequence (302 amino acids)

>PGA1_65p00420 putative ABC type transporter (Phaeobacter inhibens DSM 17395)
MASLSSSAPPAQPRPLSPPKTQVTAQAPAQTPAQIPASPAANPHHRHRRSMATLRTVAAL
VLREMSTRYGRTPGGYLWGILEPLAAILFLSLGFSLVIRTPSLGTSFLLFYATGFLPFNL
YQTLSGTVARALAYSRPLLRYPAVTWLDAILARFVLNSLTGIVITTLLITGILAVIDSRT
AIDLPPLVEAITLAMVLGLGVGCINAVLMGLFPLWDVAWSIITRPLFLASGVIYIYEDLP
PVAQDVLWYNPLLHITGLMRTGFYPTYNADYVSHAYVLLIGMTLTALGLILMRRYHRVIL
NR