Protein Info for Psest_4008 in Pseudomonas stutzeri RCH2

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1581 PF01590: GAF" amino acids 51 to 176 (126 residues), 24.4 bits, see alignment E=2.1e-08 amino acids 890 to 1027 (138 residues), 49.6 bits, see alignment E=3.2e-16 TIGR00229: PAS domain S-box protein" amino acids 184 to 307 (124 residues), 73.8 bits, see alignment E=6.8e-25 amino acids 311 to 433 (123 residues), 62.1 bits, see alignment 2.8e-21 amino acids 438 to 565 (128 residues), 58.2 bits, see alignment E=4.6e-20 amino acids 1038 to 1163 (126 residues), 54.6 bits, see alignment E=6.1e-19 PF13188: PAS_8" amino acids 188 to 240 (53 residues), 22.5 bits, see alignment (E = 4.5e-08) amino acids 315 to 366 (52 residues), 27.6 bits, see alignment (E = 1.1e-09) amino acids 442 to 491 (50 residues), 23.4 bits, see alignment (E = 2.4e-08) amino acids 1042 to 1091 (50 residues), 15.6 bits, see alignment (E = 6.9e-06) PF00989: PAS" amino acids 191 to 299 (109 residues), 40.6 bits, see alignment 1.3e-13 amino acids 315 to 426 (112 residues), 49.5 bits, see alignment 2.2e-16 amino acids 443 to 558 (116 residues), 50.9 bits, see alignment 8.4e-17 amino acids 1042 to 1152 (111 residues), 26.7 bits, see alignment 2.6e-09 PF13426: PAS_9" amino acids 201 to 302 (102 residues), 46.5 bits, see alignment 2.1e-15 amino acids 326 to 426 (101 residues), 35.6 bits, see alignment 5.4e-12 amino acids 452 to 560 (109 residues), 48.8 bits, see alignment 4.1e-16 amino acids 1056 to 1155 (100 residues), 30.8 bits, see alignment 1.6e-10 PF08448: PAS_4" amino acids 201 to 304 (104 residues), 40.4 bits, see alignment 1.7e-13 amino acids 322 to 431 (110 residues), 50.1 bits, see alignment 1.7e-16 amino acids 447 to 562 (116 residues), 34.4 bits, see alignment 1.3e-11 amino acids 1049 to 1157 (109 residues), 40.5 bits, see alignment 1.6e-13 PF08447: PAS_3" amino acids 339 to 423 (85 residues), 36 bits, see alignment 3.8e-12 amino acids 751 to 839 (89 residues), 33.3 bits, see alignment 2.6e-11 amino acids 1067 to 1150 (84 residues), 54.4 bits, see alignment 6.8e-18 PF13185: GAF_2" amino acids 888 to 1027 (140 residues), 30.8 bits, see alignment E=1.7e-10 PF00512: HisKA" amino acids 1212 to 1277 (66 residues), 34.3 bits, see alignment (E = 1.1e-11) PF02518: HATPase_c" amino acids 1320 to 1438 (119 residues), 73.7 bits, see alignment 9.3e-24 PF00072: Response_reg" amino acids 1463 to 1573 (111 residues), 64.9 bits, see alignment 4e-21

Best Hits

KEGG orthology group: None (inferred from 82% identity to psa:PST_0267)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRS5 at UniProt or InterPro

Protein Sequence (1581 amino acids)

>Psest_4008 PAS domain S-box (Pseudomonas stutzeri RCH2)
MTRLNYSAPWTAEQDILNADYSAPAATWNEAERLAALARYPALDDASDADFAELAAMAAQ
LCACPAAAIHFIDAQFQHCKAAIGLAQQPLARERALCAEAILQAGPLVVHCANDTSTQLE
LPRFGDGEIAGFYAAAILRDDDGLALGTLCVCDHQPRELTARQAAQLQAVARQVMALLEL
RRLRAEEERSRQIIDSAQDYAILATDPNGYITSWNSGAQLLLGWSAEEAIGQHASMIFTD
EDRARSVDEQEMRTALEQGRAIDERWHQRSDGSRFWGSGILTPLLANGRPRGFVKILRDL
TESRLQQARARQTEERYRTLVDLSPQMVWQCDAQGQLSFCNSYWCEFTGLDEEQSLGEGW
LAAIAASEREATVEQWRQAMGRELPCRLELPLQDVDGSLRWFQANAAPVYDADGSLLHWI
CVAQDVDSRRRSEMQRLESEAFTRLLLDSANEGFYSIDRSGAVTLCNDAFLNLLGFTSRD
EVLGRQLHQLIHHSHADGSPYPVQDCPIQHTAITGEPRHVEHELFFRVDGSSLPVEYRVA
PIYRDGELQGAICTFSDISERTQHQALQAFLLELSDCLQAENERVDLCCVLDERLARLTR
CDCIAWGHVENDELIVQQEWLAADAPSRLGHHMLQADAVQLLARLPHEHIIVPDAAQALH
QSLTSATLLISELPTIEATKPHAVLIFARSQAQPWSPDDIALAREVLERLRGAAERIRAN
KALRDAEQRISLANEIASIGVWEYRDSHHSLHWDTQLKAMAGIPPDQPGLDVHEILARVH
PDDRGKLLKALGDTLAGKGDGEFQLDYRIFDTRINEFVWLANRGRRLFDASGAVRILGTA
RNITAERNAAERMLRMNEMLEEQIRDRQQAEQRQTALIELGDLLREQHDSQTIAHAAVSV
IGRTTGVSRVLFASVDASSQRATIERYWSDGSSDSSTEVVNFADYGDFFYDLQENELVVI
EDVLHDARTASHAENFAESQIRSLVCVPLFEQGRLSAVFMLLEEQPRGWFDDDISFIREV
ADRAWTADERMRAERALRESEEQFRTLADNMSQFAWMADPGGRIYWYNKRWYDYTGTTSE
AMRALGWRAVNHPDHHERVSASMKRAFAIGSIWEETFPLRGKDGKYRWFLSRALPIRDDF
GQVTHWFGTNTDVTAQVAAEEALRELNDSLERRVAERTRELAAINSRLHIEMAERERAED
ALRHAQKMEAIGQLTGGLAHDFNNMLTGVLGALDLIQRRVANGVTGDLDRYIDAATTSAN
RAAALTHRLLAFARRQSLDPKPVDVNLLVVSMEDMLRRTMGEHIQLEVELQSDAWIAYTD
GHQLENALLNLVINARDAMPDGGRLGVNTCNVRIQHHQPDAPEPGDYVVLSVTDNGSGMS
AQTIAKAFDPFFTTKPIGQGTGLGLSMVYGFAKQTGGHVRIDSRLGEGTQVILYLPRNQA
EDAPPPGPQQQTEVPSAMHGETVLVVEDEAAVRMLVVEVLNELGYQVLEACDAGSALPHL
HSEQHLDLLITDFGLPGLNGRQLVESARQHRPELKVLFITGYVPDEEMRNDFLGPGMDIL
PKPFSIDILAARIRKLIDGAS