Protein Info for Psest_3997 in Pseudomonas stutzeri RCH2

Annotation: uncharacterized domain 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 TIGR00369: uncharacterized domain 1" amino acids 16 to 126 (111 residues), 87.1 bits, see alignment E=4.4e-29 PF03061: 4HBT" amino acids 44 to 117 (74 residues), 69.9 bits, see alignment E=1.9e-23 PF13622: 4HBT_3" amino acids 44 to 127 (84 residues), 49.7 bits, see alignment E=3.6e-17

Best Hits

KEGG orthology group: K02614, phenylacetic acid degradation protein (inferred from 98% identity to psa:PST_0277)

Predicted SEED Role

"Uncharacterized protein, possibly involved in aromatic compounds catabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GR61 at UniProt or InterPro

Protein Sequence (129 amino acids)

>Psest_3997 uncharacterized domain 1 (Pseudomonas stutzeri RCH2)
MSIQVEAVGSSSAFGRLLGLEIHQVGNGEAVLGLSMHDGLRNLHGKLHGGALFSLIDTAM
GQASHSLGDGSPNSVTLECKVNYIRPVSDGELRCRAWVVHGGRRTQVLEAEVHQGDKLIA
KAQATFACL