Protein Info for Psest_3990 in Pseudomonas stutzeri RCH2

Annotation: PAP2 superfamily.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 61 to 84 (24 residues), see Phobius details amino acids 96 to 116 (21 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 213 to 241 (29 residues), see Phobius details PF01569: PAP2" amino acids 149 to 227 (79 residues), 33.6 bits, see alignment E=1.5e-12

Best Hits

KEGG orthology group: None (inferred from 82% identity to psa:PST_0291)

Predicted SEED Role

"Membrane-associated phospholipid phosphatase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GT46 at UniProt or InterPro

Protein Sequence (263 amino acids)

>Psest_3990 PAP2 superfamily. (Pseudomonas stutzeri RCH2)
MSMNTPQARWRPLPLLVSQLFAGLLLLSWLWPTTRALWDAVDHAVFRLLNGSLGAVGWWD
WLWALSSIRVFDILVGALLLTLLIRRDWLFAQHQLRPALFTFIGLLLVLLVIRVLVTKLA
SHFGWQHASPSLEIPGAYHLSDHFPLLERVFELKDRSSRSFPGDHASVLLIWGLFMALFA
RGSRLAVILGVTLLFMLPRLVAGAHWFSDDFVGGLLIAALALGWGYCTPVAAHIAALLQW
IVRPPMQLAGKLPLLRRMAVLRD