Protein Info for PGA1_65p00210 in Phaeobacter inhibens DSM 17395

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 transmembrane" amino acids 67 to 83 (17 residues), see Phobius details PF14602: Hexapep_2" amino acids 126 to 161 (36 residues), 28.4 bits, see alignment 1.1e-10 PF00132: Hexapep" amino acids 127 to 161 (35 residues), 34.3 bits, see alignment 1.3e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ETB0 at UniProt or InterPro

Protein Sequence (284 amino acids)

>PGA1_65p00210 hypothetical protein (Phaeobacter inhibens DSM 17395)
MRRLLADHHVMPKPWRNERDLTALKRISFPLDLSLSVLTRHGLKAGGLLPLSSIGYMSYS
HSPSRNWSAGAFCSIAAGLRVLGDRHPIRRVSSHPFSYGPYYGKLARDLGAETYEPHARF
NTKTPPVRIGNDVWIGRGVQMAGGITIGNGAVVAAGAIVTKDVPPYAVVGGVPARVLKYR
FAAPLIARLEATAWWDYPLETLAAFKMGHPRRFCKAFEPEEANLAKREERWITAADLQAL
AAPVDVARASLSRAITLPEGRTRGPVSKQIRRISDRLTRIVRSA