Protein Info for Psest_3968 in Pseudomonas stutzeri RCH2

Annotation: Acyl-CoA dehydrogenases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 PF12418: AcylCoA_DH_N" amino acids 3 to 26 (24 residues), 38.5 bits, see alignment (E = 2.3e-13) PF02771: Acyl-CoA_dh_N" amino acids 41 to 154 (114 residues), 45.2 bits, see alignment E=2.7e-15 PF02770: Acyl-CoA_dh_M" amino acids 160 to 269 (110 residues), 52.4 bits, see alignment E=1.2e-17 PF00441: Acyl-CoA_dh_1" amino acids 279 to 451 (173 residues), 80.7 bits, see alignment E=3.3e-26 PF12806: Acyl-CoA_dh_C" amino acids 468 to 590 (123 residues), 109.3 bits, see alignment E=3.6e-35

Best Hits

KEGG orthology group: None (inferred from 96% identity to psa:PST_0311)

Predicted SEED Role

"Acyl-CoA dehydrogenase (EC 1.3.8.7)" (EC 1.3.8.7)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.3.8.7

Use Curated BLAST to search for 1.3.8.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRM0 at UniProt or InterPro

Protein Sequence (596 amino acids)

>Psest_3968 Acyl-CoA dehydrogenases (Pseudomonas stutzeri RCH2)
MEYKAPLRDMRFVLHELFDATAHCELLGNGLDRELIDGVLEEAARYTGGEIAPLNRNSDE
EGVTLENGEVRTPQGFVEAYRQYVDNGWASMTGPTEYGGQGFPQLVACNFHEMLMGASLS
FRIYSGLTEGAVLALYKHGSDELKNAYLEKLVSGSWSGTMCLTEPQAGTDLALLRTRAEP
QADGSYKVSGSKIFISGGEHDMSENIVHLVLARLPDAPAGVKGISLLLVPKFIANADGTL
GERNALSCGAVEHKMGIKGAATCVMNFDGATGWVVGAPNQGLACMFTMMNDARFQVGLQG
LGIAEQAYQGSLAYARERLQSRGLAGVQHPDKPADPIIVHPDVRRMLLTQKTLVEGSRML
AAYCARQLDLEHGHPEPSHRKAASTRAALLIPIVKAFFTDMGQEVASLGVQVYGGHGYIR
EWGMEQLMRDSRITQLYEGTNGIQALDYIRRKLLGDGGAELSALQAEFSEICDRQIDRPA
LHDMASKVQARIGEWRELTAEIIAATGRDPQEIGAVSVDFLQYSAYVLLAGLWLQAAGRA
QDALEQGSAEEAFYQAKLASADFYLRRVLPRASAHREAIQGGAACLMALPESDFAF