Protein Info for Psest_3960 in Pseudomonas stutzeri RCH2
Annotation: 3'(2'),5'-bisphosphate nucleotidase, bacterial
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 51% identical to CYSQ_ECO57: 3'(2'),5'-bisphosphate nucleotidase CysQ (cysQ) from Escherichia coli O157:H7
KEGG orthology group: K03677, CysQ protein (inferred from 86% identity to psa:PST_0319)MetaCyc: 50% identical to 3'(2'),5'-bisphosphate nucleotidase (Escherichia coli K-12 substr. MG1655)
3'(2'),5'-bisphosphate nucleotidase. [EC: 3.1.3.7]
Predicted SEED Role
"3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)" (EC 3.1.3.7)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 3.1.3.7
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See L0GT03 at UniProt or InterPro
Protein Sequence (272 amino acids)
>Psest_3960 3'(2'),5'-bisphosphate nucleotidase, bacterial (Pseudomonas stutzeri RCH2) MNHPYLSSVIDLVRQAGAVILPHWRSELAVQAKADDSPVTAADMAAHRVLADGLRALDGA IPVLSEEDCELSLAERASWTRWWLVDPLDGTKEFIAGSEEFTVNVALIEEGKVRFGVVGI PASGRCYYGGEDFGAWRSEADGAAEPLRVRRQPVDAFTVVASRRHSSPAQEQLLGRLGER FGELALANVGSSLKFCLLAEGAADCYPRLAPTSQWDTAAAQGVLEGAGGEVLDVSGVPLR YEARASYLNPSFLALPKDVDWRDWLIELANRG