Protein Info for PGA1_78p00510 in Phaeobacter inhibens DSM 17395

Annotation: multidrug transporter MdtB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1047 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 332 to 351 (20 residues), see Phobius details amino acids 357 to 377 (21 residues), see Phobius details amino acids 383 to 407 (25 residues), see Phobius details amino acids 428 to 449 (22 residues), see Phobius details amino acids 460 to 483 (24 residues), see Phobius details amino acids 526 to 547 (22 residues), see Phobius details amino acids 852 to 873 (22 residues), see Phobius details amino acids 881 to 902 (22 residues), see Phobius details amino acids 908 to 930 (23 residues), see Phobius details amino acids 958 to 977 (20 residues), see Phobius details amino acids 1001 to 1024 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 10 to 1023 (1014 residues), 567.1 bits, see alignment E=3.4e-174

Best Hits

KEGG orthology group: None (inferred from 49% identity to rce:RC1_1430)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F2S0 at UniProt or InterPro

Protein Sequence (1047 amino acids)

>PGA1_78p00510 multidrug transporter MdtB (Phaeobacter inhibens DSM 17395)
MNGFLAVIFARSRAVMLIFSALLCGGAYAYLNIPKESNPDIPIPFVYVSTSLSGISPDDS
ERLLVKPLETGLSGLADLKEMKGHAYEGYASVTLEFEAGADVAEALDRVRVAVDQARPDL
PEAATEPVVVEINTALFPVLTTVLSGPVPERSLNRMARELETRLEALTGVLEVDIGGGRS
DLLEVLIDPVAFATYGLSFEALVGQINRNNAMIAAGTIDGAAGRFVLKVPGLVDGAADLM
QMPVKVEGGAVVTLGDIAVVRRRFEDPRSFARINGQPALTLDITKRSGANIIETVAAAKA
VIATGQQDWPQSVRVDYLLDESREVETMLGDLEANVVAAIVLVMLVVIYALGLRPALLVG
LSIPGAFLAGVALLWAMGITMNIVVLFSLILVVGMLVDGAIVTTELADRYLQEGRTAAEA
YRAAAGRMAGPLVSSTATTLSVFVPLLFWTGTTGEFMKFLPITVIVTLAASLLMALVFIP
VLGGMIARRSPQSAAAKQALHAAEHGDPRLGRGMAGIYARMLQRALLFPGTTVLLSVALL
LGTFGLYGKYGVGLTFFPEVEPEFMQVQLRARDNFSIHERDALVRVVEDQLLQTAGITSV
YAVTSLGGGDDLDLIGTIQLELDPWDQRPPAAEIGAGIRAEVADLPGVEVRVETEDDGPS
SDKPLDLHITARDSSVAEAAVAQIREIMTGIGGFTDVADSRALPGVEWRIEIDRAEAARY
GADLNLLGQTVQLLTHGVMVTSFRPDDVAESVDVRVRFPAAERSFDGLRALRVPTASGLV
PIANFTRFAPVPRSGSIERRDQSRVLTLSANVAPGLLADAQIERLRQAMVVADLPDGVSW
RFKGEAEEQDAAMRFLLLAFVTAVVLMAVILIAQFNSFYQAAVVMSAIVFSIAGVLLGLL
VAGRPFGVVMGGIGVIALAGIVVNTNIVLIDTYNAQRSAGQSPCEAALRAGALRLRPVVL
TSLTTVLGLMPMVLGMKLDLLTGSMVFGAPSSQWWTELSTTIAGGLVAATLLTLLVTPAM
LVLGTRGQQRRARRRAARRGLAAEATA