Protein Info for PGA1_78p00380 in Phaeobacter inhibens DSM 17395

Annotation: ABC transporter, permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 64 to 85 (22 residues), see Phobius details amino acids 97 to 115 (19 residues), see Phobius details amino acids 117 to 139 (23 residues), see Phobius details amino acids 148 to 172 (25 residues), see Phobius details amino acids 196 to 219 (24 residues), see Phobius details amino acids 234 to 259 (26 residues), see Phobius details amino acids 279 to 299 (21 residues), see Phobius details amino acids 306 to 325 (20 residues), see Phobius details PF01032: FecCD" amino acids 25 to 326 (302 residues), 198.5 bits, see alignment E=7.1e-63

Best Hits

Swiss-Prot: 46% identical to YCLN_BACSU: Petrobactin import system permease protein YclN (yclN) from Bacillus subtilis (strain 168)

KEGG orthology group: K02015, iron complex transport system permease protein (inferred from 60% identity to rsk:RSKD131_3401)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E6S6 at UniProt or InterPro

Protein Sequence (331 amino acids)

>PGA1_78p00380 ABC transporter, permease protein (Phaeobacter inhibens DSM 17395)
MADATGSAIGPGRSARGAICLCLLLLVLLAGLSCAIGVNQTSPLALLQDPKAAQLLLISR
IPRTLAVILTGATMAVAGVIMQLLVRNRFVEPGTTGTNEAAMLGLLGATLLAPALPIFAK
MLCAAVAALLGTLVFLALARRIPPQQPLLVPLVGLVYGGILAAAAGFIAFQADLLQYLAI
WMSGEFSGVLSGRYELLWLAGVLAGLAYLVADQFTIAGLGEMASRGLGLRYGQVLGFGVV
VVSLVSALVIVTVGVLPFVGLVVPNLVSRIMGDNLRDSLPLVAATGAGLLLVCDMLGRLL
RAPYEIPAGTVFGLFGAALFLVMLLRRPAHG