Protein Info for HP15_3798 in Marinobacter adhaerens HP15

Annotation: 3-hydroxybutyrate dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 TIGR01963: 3-hydroxybutyrate dehydrogenase" amino acids 6 to 259 (254 residues), 309.7 bits, see alignment E=6.6e-97 PF00106: adh_short" amino acids 7 to 196 (190 residues), 181.1 bits, see alignment E=3.5e-57 PF08659: KR" amino acids 9 to 173 (165 residues), 44 bits, see alignment E=4.7e-15 PF13561: adh_short_C2" amino acids 12 to 257 (246 residues), 177.3 bits, see alignment E=8e-56

Best Hits

Swiss-Prot: 41% identical to BDHA_RHIME: D-beta-hydroxybutyrate dehydrogenase (bdhA) from Rhizobium meliloti (strain 1021)

KEGG orthology group: K00019, 3-hydroxybutyrate dehydrogenase [EC: 1.1.1.30] (inferred from 97% identity to maq:Maqu_0088)

Predicted SEED Role

"D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)" in subsystem Polyhydroxybutyrate metabolism (EC 1.1.1.30)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.1.30

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PIW4 at UniProt or InterPro

Protein Sequence (259 amino acids)

>HP15_3798 3-hydroxybutyrate dehydrogenase (Marinobacter adhaerens HP15)
MRLENRIALITGAGRGIGRAIAEAYGREGAKVAVADLTLEAAQDTVDAIEQAGGTAIALE
MDVTDEEAVDVNVNSVVKQWGGLDIAIANAGIQHIDPVHKLAYSDWRKVMNVHLDGAFLV
TRAALKHMYESGGGTMLYMGSVHSLEASPLKAPYVAAKHGMLGLCRAVAKEGAEHGVRSN
IICPGFVRTPLVDKQIPEQAKELGISEEEVISKVMLKNTVDGEFTTLEDVAELAVHLAAF
PSAALTGQSIVVSHGWHMQ