Protein Info for PGA1_78p00200 in Phaeobacter inhibens DSM 17395

Annotation: Sugar phosphate isomerases/epimerases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 PF01261: AP_endonuc_2" amino acids 22 to 227 (206 residues), 47.3 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: None (inferred from 49% identity to oan:Oant_3458)

Predicted SEED Role

"Sugar phosphate isomerases/epimerases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DWY7 at UniProt or InterPro

Protein Sequence (247 amino acids)

>PGA1_78p00200 Sugar phosphate isomerases/epimerases (Phaeobacter inhibens DSM 17395)
MTAISYQLYGSRNWPLADTLSMLAEAGYKHVEGYGALFAQAPSLAEDLRAAGLSMPTLHY
GLDDLERDPQAAVDLGRAVGAEAIFAPMLQAPDRPVDPAGWQAFAARLVAAGRPLQEAGF
VFGWHNHDFELIDLGDGVMPLDIIAGAAPELKLELDLGWTARAGHDPVAMVERFAGQIHA
AHIKDVAPVGACTDEDGWADVGHGMVTWAPVHAALQQAGVRRYVIEHDNPSDHRRCARRS
LATVQAF