Protein Info for Psest_3911 in Pseudomonas stutzeri RCH2

Annotation: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 462 PF00072: Response_reg" amino acids 9 to 114 (106 residues), 80 bits, see alignment E=4.4e-26 PF00158: Sigma54_activat" amino acids 147 to 311 (165 residues), 224.4 bits, see alignment E=2.2e-70 PF14532: Sigma54_activ_2" amino acids 147 to 317 (171 residues), 85 bits, see alignment E=1.8e-27 PF07728: AAA_5" amino acids 169 to 290 (122 residues), 31.5 bits, see alignment E=4.9e-11 PF00004: AAA" amino acids 170 to 291 (122 residues), 28 bits, see alignment E=8.2e-10 PF02954: HTH_8" amino acids 418 to 457 (40 residues), 46.9 bits, see alignment 5.5e-16

Best Hits

KEGG orthology group: None (inferred from 96% identity to psa:PST_0364)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GQV5 at UniProt or InterPro

Protein Sequence (462 amino acids)

>Psest_3911 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains (Pseudomonas stutzeri RCH2)
MTEVTQERVLLVEDDDSLRQLLVEELEDRGLQVRALASAEEAVGSLESWEPALVVSDLRL
PGADGMALLRRVKSMQAAPAFLVITAFGSIQQAVAALKEGADEFLTKPLDLEHFGLAVAR
ALETRRLRDEVRRFQQLLSDDRFHGMLGRSRVMRGLFDQIRQLARAEGPVLVIGESGTGK
ELVARAVHAESERANRPFLAINCAGLPAELLESEFFGHVAGAFTGANRAHKGLFQQADGG
TLFLDEIGEMPLPLQAKLLRVLQEGTIRPVGAERELTVDVRIIAASNRPLETEAGREAFR
EDLFFRLETFILQVPPLRDREEDLELLAAGFVAHFAARSGRPVRGLAPAVLAQLRRYPFP
GNVRELQNAIERAVTFCHGRSIELEHLPSRIADYRDDNARSAGAELLAQLSDGPLLPTLE
ELELRYIEHVLKLVDGNKRRAAALLGIGRRTLYRRLGEREDG