Protein Info for PGA1_c03950 in Phaeobacter inhibens DSM 17395

Annotation: putative permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 53 to 76 (24 residues), see Phobius details amino acids 87 to 104 (18 residues), see Phobius details amino acids 110 to 131 (22 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details amino acids 240 to 264 (25 residues), see Phobius details amino acids 276 to 294 (19 residues), see Phobius details amino acids 301 to 323 (23 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 57 to 340 (284 residues), 111.5 bits, see alignment E=2.1e-36

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 88% identity to sil:SPO0377)

Predicted SEED Role

"Predicted nucleoside ABC transporter, permease 1 component" in subsystem D-ribose utilization or Deoxyribose and Deoxynucleoside Catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DXE3 at UniProt or InterPro

Protein Sequence (364 amino acids)

>PGA1_c03950 putative permease protein (Phaeobacter inhibens DSM 17395)
MDKMPKWADVVLIPLISLILAAILSALVILGIGEDPIAAVNLMVSGALGSTYGWGYTLYY
ATNFLFTGLAVSVAFHARLFNIGGEGQAMLGGLGVALVCLYIPWPHWSLALIFASLGAAL
FGAAWAAIPAYLQAKRGSHIVITTIMFNFIAAAVLNYVLVNLLRPEGSMDPATARFPEAV
HLPSLHELLAPIGIEFSKAAPANVSFLVAVAACIAVWLLIWRTKLGYEIRAYGNSEYGAL
YAGISPVKITMVAMLISGGLAGMMATNNVMGEAERLVLNSTEGAGFIGIAVALMGRSHPF
GVFLAAILFGFLYQGGAELALWTSIPRELIVVIQALVILFTGALDNMVRGPLERIFLALR
RGKA