Protein Info for PGA1_78p00020 in Phaeobacter inhibens DSM 17395

Annotation: putative ubiquinone biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 PF03109: ABC1" amino acids 123 to 361 (239 residues), 201.7 bits, see alignment E=5.6e-64

Best Hits

KEGG orthology group: None (inferred from 57% identity to sit:TM1040_3369)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ET28 at UniProt or InterPro

Protein Sequence (472 amino acids)

>PGA1_78p00020 putative ubiquinone biosynthesis protein (Phaeobacter inhibens DSM 17395)
MTSSPDETKLDHIGPDEIRPVTGQPIAADARAVAVPSGRVSRLARMGGLAAQVAGSAVVG
GVQALSQGHRPQLRDLLLTPANARRLTAELARMRGAAMKLGQLMSMESGALLPQALSQIL
SRLRAEADFMPPKQLRQVLDAVWGEGWRRQFSRFDVRPMAAASIGQVHRAQLRDGRDLAI
KVQYPGVARSIDSDVANLGSLLRASRLLPRGFDIAPYLEEARRQLHEEVDYAREGRCLAE
FAAQLEDQPQFLVPEFHPDWSTGAVLAMSYARGRPVEDAQTAPQEMRDRVMRDLMALMLQ
ELFEFGLMQSDPNFANYLFDREGAAIVLLDFGATRQLAPQVVAQYRALLRAGMSGDAAAL
TAAAADLGLVAPDGMADAGTMRADHQRRVLVMITQVFDVLRTSESYDFADPSLLQQMQAE
GLALAEEGMVPPAVPMDVLFIQRKLAGMVLLAGRLGARVPVRALLSPYLEDT