Protein Info for PGA1_c03940 in Phaeobacter inhibens DSM 17395

Annotation: putative permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 signal peptide" amino acids 1 to 13 (13 residues), see Phobius details transmembrane" amino acids 22 to 41 (20 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 159 to 181 (23 residues), see Phobius details amino acids 187 to 206 (20 residues), see Phobius details amino acids 211 to 230 (20 residues), see Phobius details amino acids 240 to 265 (26 residues), see Phobius details PF02653: BPD_transp_2" amino acids 1 to 257 (257 residues), 101.9 bits, see alignment E=1.8e-33

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 88% identity to sil:SPO0376)

Predicted SEED Role

"Predicted nucleoside ABC transporter, permease 2 component" in subsystem D-ribose utilization or Deoxyribose and Deoxynucleoside Catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EJ05 at UniProt or InterPro

Protein Sequence (278 amino acids)

>PGA1_c03940 putative permease protein (Phaeobacter inhibens DSM 17395)
MLMAAFFSAAVAATTGNVWLGLLAGIASSLVLSGLHGLASITFRGNQLISGVAINFLAAG
MTVLIAQDWFQQGGRTPSLFSGGRFEPINLPFADALANVPVLGPIYSELLSGHSVLVYLA
FLAVPATAWVLFGTRFGLRLRAVGENPAAVDTAGVSVVGLRYAAVMICGLLCGIAGAYLA
TALQAGFVKDMTAGRGFIALAALIFAKWRPWHALGACLLFGLLQAVALRFQNIEIGTFVI
PVQMMDALPYILTVVILAGFVGKAVPPKAGGEPYVKER