Protein Info for Psest_3872 in Pseudomonas stutzeri RCH2

Annotation: FAD/FMN-containing dehydrogenases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 PF01565: FAD_binding_4" amino acids 49 to 187 (139 residues), 139.3 bits, see alignment E=6.9e-45 PF02913: FAD-oxidase_C" amino acids 225 to 469 (245 residues), 209.7 bits, see alignment E=5.9e-66

Best Hits

KEGG orthology group: None (inferred from 99% identity to psa:PST_0399)

Predicted SEED Role

"D-2-hydroxyglutarate dehydrogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRC7 at UniProt or InterPro

Protein Sequence (472 amino acids)

>Psest_3872 FAD/FMN-containing dehydrogenases (Pseudomonas stutzeri RCH2)
MNRMRVPVMTDPALIDELKTLVEPGKVLTDADSLNAYGKDWTKHFAPAPSAIVFPKSIEQ
VQAIVRWANERKVALVPSGGRTGLSAAAVAANGEVVVSFDYMNQILEFNEMDRTAVCQPG
VVTAQLQQFAEDKGLYYPVDFASAGSSQIGGNIGTNAGGIKVIRYGMTRNWVAGMKVVTG
KGDVLELNKDLIKNATGYDLRQLFIGAEGTLGFVVEATMRLERQPTNLTALVLGTPDFDS
IMPVLHAFQDKLDLTAFEFFSDKALAKVLGRGDVPAPFETDCPFYALLEFEATTEERADQ
ALATFEHCVEQGWVLDGVMSQSEQQLQNLWKLREYISETISHWTPYKNDISVTVAKVPAF
LKEIDTIVGEHYPDFEIVWFGHIGDGNLHLNILKPDAMDKDEFFGKCATVNKWVFETVQK
YNGSISAEHGVGMTKRDYLEYSRSPAEIEYMKAVKAVFDPNGIMNPGKIFAA