Protein Info for Psest_3868 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 115 PF07411: DUF1508" amino acids 10 to 52 (43 residues), 66.3 bits, see alignment E=8.9e-23 amino acids 62 to 108 (47 residues), 73.2 bits, see alignment E=6.3e-25

Best Hits

Swiss-Prot: 64% identical to Y329_PSEAE: UPF0339 protein PA0329 (PA0329) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K09946, hypothetical protein (inferred from 68% identity to pap:PSPA7_0421)

Predicted SEED Role

"FIG00959217: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNL0 at UniProt or InterPro

Protein Sequence (115 amino acids)

>Psest_3868 Uncharacterized conserved protein (Pseudomonas stutzeri RCH2)
MSGKFHLKRASNGQFHFNLLAGNGQVVLSSEQYKAHASALNGIDSVRKNAVREDAFEVKE
SSNDKFYFVLKASNGQVIGQSQMYASLHSAEQGCDSVRRHAPDAALQDESAAPVA