Protein Info for PGA1_c03900 in Phaeobacter inhibens DSM 17395

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 PF13604: AAA_30" amino acids 44 to 272 (229 residues), 76 bits, see alignment E=6.6e-25 PF13245: AAA_19" amino acids 44 to 226 (183 residues), 48.2 bits, see alignment E=2.5e-16 PF13538: UvrD_C_2" amino acids 419 to 475 (57 residues), 33.9 bits, see alignment 4.7e-12

Best Hits

KEGG orthology group: K01144, exodeoxyribonuclease V [EC: 3.1.11.5] (inferred from 88% identity to sit:TM1040_3101)

Predicted SEED Role

"RecD-like DNA helicase Atu2026"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DXE0 at UniProt or InterPro

Protein Sequence (512 amino acids)

>PGA1_c03900 hypothetical protein (Phaeobacter inhibens DSM 17395)
MSAAPIKFSDDQAVAFDRVSSLLHDAGVDLEDDLLHPPRGDGGAMAVIGKAGSGKTLLLA
ELYKALEKAGVEVVSGDYESRKKNEDRRTLAILAPTNKAASVLRLRGVPATTIHRILYTP
VYDPEYERIAEWLAGSGDEPEIEGVTEEALARAKAFYERNKSIPGALAAAGLRGSDFITG
WKRREEPLDIGFIDEASMLDDRQFQDLKEIFPTLLLFGDPAQLAPVNQSGAMVFETLPEE
RKLILNRIHRQEAGNPILDLAHALADPDVGFEDFERMVEDLSRQDERVVWGQRVEVDLMA
RSPVLVWRNNTRIRLINAFRNVHGAPEDSLLAGEPLICDGIELPMKHRKKRLDLEARGLI
KGAQVIYLGPGRKPGFSRLHVMGAEDPQVSAASIVKIEKPEEEEPFIPFAARMGAAFLHG
AAVTIHKAQGSQWPTAQVFAPDIYAAARMGRVEAGQPLWKRLAYVAITRAQERLIWVVRN
RLAKPTGPLQVDDLRAAPASALTLEMQEDSPV