Protein Info for PGA1_262p01880 in Phaeobacter inhibens DSM 17395

Annotation: mandelate racemase/ muconate lactonizing enzyme-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 PF02746: MR_MLE_N" amino acids 42 to 135 (94 residues), 45.9 bits, see alignment E=6.4e-16 PF13378: MR_MLE_C" amino acids 162 to 374 (213 residues), 172 bits, see alignment E=1.6e-54

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E6I1 at UniProt or InterPro

Protein Sequence (397 amino acids)

>PGA1_262p01880 mandelate racemase/ muconate lactonizing enzyme-like protein (Phaeobacter inhibens DSM 17395)
MRHSDENTLSGALNPKTPHLIRVTTWITRQQDTLDGWAVIKPFLFLRLVFADGTEGWGEA
FTLPCREAGCEQIIHALGAKMAAANATAPNDFRMLVAQIADKHRGLDFAAASSALEMALW
DVQGKLAKMPLRHLLSDAPTNTVPVYVNIWSSAEPDIEALCDRAKLMVKQGYRAIKFYPL
QNRTPVQAAACMAHMRNAVGQDVALLLDLASPDDPALARELAPLVKPHNPYWFEEPVDGE
DTRILANIRKTCGIRVVTGEKQCGLPHFRETLAANAADILNPDIAGVGGILDMLEIAALA
DLQGVSMSPHCWNSMSIAAAAMLQVCAALPNAEMAEIYPDYLPHAAGFSDAGYRLVDGSA
VLSNRPGLGVEMDAGALDKIAAKPPIVSEIADMPSNS