Protein Info for Psest_3808 in Pseudomonas stutzeri RCH2

Annotation: Protein of unknown function (DUF3360).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 transmembrane" amino acids 55 to 79 (25 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 125 to 152 (28 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 196 to 214 (19 residues), see Phobius details amino acids 221 to 242 (22 residues), see Phobius details amino acids 272 to 291 (20 residues), see Phobius details amino acids 355 to 374 (20 residues), see Phobius details amino acids 380 to 401 (22 residues), see Phobius details amino acids 414 to 435 (22 residues), see Phobius details amino acids 457 to 480 (24 residues), see Phobius details PF11840: DUF3360" amino acids 4 to 484 (481 residues), 757.3 bits, see alignment E=4.1e-232

Best Hits

KEGG orthology group: None (inferred from 99% identity to psa:PST_0468)

Predicted SEED Role

"FIG00761799: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNF1 at UniProt or InterPro

Protein Sequence (491 amino acids)

>Psest_3808 Protein of unknown function (DUF3360). (Pseudomonas stutzeri RCH2)
MNDRDLRSYQELHKPKGNFATRSEYLEHELEIMAPKRWGINLPFRDYRFEYEDWVPAMAA
TIGKIVMVAAVVAAFAGPMGLSNEFVIENARYEMLIAAVLFVVLFSGFLNPTANLAGTHG
PLIPLIPLIVASGGHPMALGIMVGVLGFTLGVFKGGSLLARLTSDGVCGGLLLYLGFIGI
TSQIKKLFGWADSFDMGYIAFVVVFATIVMYAYLEHIRMRWLAIPLGSALAALIAFVMGA
PFEFTTEPGIPNLNPMYWWGETTGWQIGLPDLHHFIAVAPFAVLAVAMWSPDFLGHRVFQ
QLNYPPKAKKVLMNIDDTMCVAAARQIVGTSLGGGNLASSWGTFMVPAAIAKRPIPAGAL
LTGLLCVVAALWGYPMDLAIWPPVLSVALMVGVFLPLLEAGMQMTREGKTSQSAAIVIFS
SALVNPVFGWSLTVLLDNLGLIGDKERGQSLSHLHRWVIPTIVFIVLCAVMLGIGMFPGI
PAMLESFRIDL