Protein Info for PGA1_262p01310 in Phaeobacter inhibens DSM 17395

Annotation: putative flavin-containing monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00743: FMO-like" amino acids 5 to 422 (418 residues), 129.1 bits, see alignment E=7.3e-41 PF07992: Pyr_redox_2" amino acids 6 to 211 (206 residues), 42.6 bits, see alignment E=2.2e-14 PF13450: NAD_binding_8" amino acids 9 to 44 (36 residues), 27.4 bits, see alignment 1.4e-09 PF13738: Pyr_redox_3" amino acids 9 to 214 (206 residues), 48.8 bits, see alignment E=2.5e-16

Best Hits

KEGG orthology group: None (inferred from 81% identity to sil:SPO2946)

Predicted SEED Role

"monooxygenase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F2D9 at UniProt or InterPro

Protein Sequence (495 amino acids)

>PGA1_262p01310 putative flavin-containing monooxygenase (Phaeobacter inhibens DSM 17395)
MIKRKTVAVIGGGVSGLAAAKAFDERGHRVIGFERSHDFGGVWELSRSYPDVQTQSPKDL
YCYTDHPMPVDYPEWPKGPQVHAYLHSYAEKHRLARLFRLNTSITAMDRRQDGQPGWTLT
LEAAGQTWQQDFDFVAICTGQFSEKNIIRHPGQEEFVARGGQVMHSSDYTDPSLMAGKDV
VVLGGSKSATDIAVNAAKNGAKSVRLVYRENVWRVPYFVGGINFKKLLYMRAQEQQFNQW
GKTPLQRVIAAALKPLVWANFRGLETLLKLQLGLKKHNMVPTTPIEKEVSCSVPIVTPGL
FEGLNDGSITSVIGTFESYQEDGLRLSTGEVVPCDIAILAVGWKLGVPYLAQEYRDKLIE
EDGQYRVYRLSVNPDLPDMGFVGFNSSFCTVLSAEMIANWLVRYADGQLANQPSRAEMDD
SIEMMLNWRRRERPAAQVYGGLCSAPFHFKHFDELLSDMGARVHKRKNPLVEQFAPPDAT
AYGQFLATTPQYRVN