Protein Info for HP15_3656 in Marinobacter adhaerens HP15

Annotation: inner-membrane translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 15 to 33 (19 residues), see Phobius details amino acids 45 to 67 (23 residues), see Phobius details amino acids 123 to 146 (24 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 202 to 221 (20 residues), see Phobius details amino acids 242 to 263 (22 residues), see Phobius details amino acids 267 to 315 (49 residues), see Phobius details amino acids 325 to 350 (26 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 30 to 348 (319 residues), 431.5 bits, see alignment E=1.3e-133 PF02653: BPD_transp_2" amino acids 38 to 338 (301 residues), 118.3 bits, see alignment E=1.8e-38

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 90% identity to maq:Maqu_3865)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PHB9 at UniProt or InterPro

Protein Sequence (402 amino acids)

>HP15_3656 inner-membrane translocator (Marinobacter adhaerens HP15)
MKSSSPLKWFATREGLYYVALAVLLVVLLPLALDPFRLNMVGKYLTYAFVAIGLVMCWGK
AGILSLGQGVFFGLGGYCMAMFLKLEASTPEATAIQSTPGIPDFMDWNQLTELPWFWEPF
HSFSFTLLAVIGVPVLLAFVIGFAMFTRRVGGVYFAIITQAIAAILTILIIGQQGYTGGV
NGITDLQTLNGWDIRTDEARTILYFVCVGMLFLCLFVARLVQNRKLGRILVAMNAQENRV
RFSGYDVAAFKIFVFCLAAAFAGVGGAMFTLIVGFMSPSFIGIVASIEMVIFCALGGRLS
ILGAVYGALLVNAAKSGFSESFPELWPFAMGALFIGVVLAFPNGLAGLYQTYVMPLEDKI
FKRNKGAQLEAKPAEKAAEPKPTAEKTPDYDPMIDSYSPEKS