Protein Info for Psest_0372 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF03401: TctC" amino acids 53 to 309 (257 residues), 99.9 bits, see alignment E=9.2e-33

Best Hits

KEGG orthology group: None (inferred from 86% identity to pmy:Pmen_1213)

Predicted SEED Role

"Tricarboxylate transport protein TctC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GE38 at UniProt or InterPro

Protein Sequence (326 amino acids)

>Psest_0372 Uncharacterized protein conserved in bacteria (Pseudomonas stutzeri RCH2)
MKTIFRASLLSALVGIAGLAAASTTMAADVKWPTRPVQVVVIANPGGDTDFNARTMAKYF
NQITGKSMVVTNIAGGGGTLAAEQVKGAAADGNTILFTHPGQLIVNEVAGLTEDSYETFD
VSCIAGVDKSTVFVASKQSGVTSMQDLIDKSKAKPGSVTYGTEMGSFSHVQGLMLEKLTD
TKLKMVDGGTVSDRVVGMLGARLDLGAITYGSVQDYVSGGQMVALGQPNDERNPLLGDVP
TLKEQGLDITMDKPYVVAFPKGTDPAIVKKMADLMKQITEIPEYAEDLKKFKQPVAYYGT
EEAKQILAKTREDFMQFKDELRTAKK