Protein Info for PGA1_262p01140 in Phaeobacter inhibens DSM 17395

Annotation: RTX toxins and related Ca2+-binding proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1725 PF14252: DUF4347" amino acids 6 to 169 (164 residues), 166.4 bits, see alignment E=5e-53 PF00353: HemolysinCabind" amino acids 1475 to 1509 (35 residues), 27.9 bits, see alignment (E = 1.9e-10) amino acids 1501 to 1534 (34 residues), 28.2 bits, see alignment (E = 1.5e-10) amino acids 1510 to 1544 (35 residues), 28.4 bits, see alignment (E = 1.3e-10) amino acids 1538 to 1571 (34 residues), 33.5 bits, see alignment (E = 3.4e-12) amino acids 1547 to 1581 (35 residues), 37.2 bits, see alignment (E = 2.3e-13) amino acids 1573 to 1608 (36 residues), 37.8 bits, see alignment (E = 1.4e-13) amino acids 1583 to 1615 (33 residues), 26.3 bits, see alignment (E = 5.8e-10) amino acids 1618 to 1652 (35 residues), 30.2 bits, see alignment (E = 3.4e-11)

Best Hits

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E6C1 at UniProt or InterPro

Protein Sequence (1725 amino acids)

>PGA1_262p01140 RTX toxins and related Ca2+-binding proteins (Phaeobacter inhibens DSM 17395)
MIDIQVFVFDPSVEQYQTLLQDLPEQAKIVLLDSDKPGLAQIADALRDMSGLSALHVVSH
GDEGKLFIGNEVVTKSVITDNPEVMEVLGEALYPTGDILLYGCKVAATAQGEAFVTALAK
ATGANVAASQTLTGAAELGGDWTLGLQRGAVTTPVGVSAAAQTQFSGVLSTVIDYSANSY
NGSNKADWVDGSDGIADFPGITLTLDYGDGTEGANTFTNMNIRGVMNMAVGAVLGGNVGN
TDGTFFNNDSNGFQLSGDGDFSFEGFTVIGRANSLSGDTFTIRGFNSSGTEVVTDSLDWG
VSGANVTATYSIGSGSWDSDAAWASVRTVVVDYSNDPSFQEFAVVSITVDAATPSNVVPV
LGGTPADKTATEDVATAIDLSAYNVSDADGDTITLTLAVDRGTIASTDGNGVTGGVTVAN
SGTGSMTLQGSAATLNTYLNDTTKIEFTASSNDTTTATLTVTPSDGTATGTADTISINVT
SVNDAPTLVATGGNPTYVEGATASDLFNTVTASTVESGEMFTGLTLTVTNVSDGADEVLN
FDGSQVTLTHGFSATTATNGLSVTVSLSGTTATVSFSGASLSAAGLQTLVDGLSYQNTSD
DPTTSANRVVTLTETTDSGGTANGGDDSATLSLTSTVSITAVNDAPGLSNLSGDNATLLP
GTVEDIDAGGNTTLTNADSGDYDGGFLLITDNGGNNTASGDFSVDGTTVTSDADATIAAG
EIIAVNGVSIGTVHATDDGQGGNDLRIDFGANATNATIQSLIQNLSWGAAAGSGQQTFTI
TLNDNDGTADGGDQDISVDFSMSIGNKPVIANLSGDTVAFVENGGDVALDTNADITVSDA
DGGNFNSGSLTVAFQSGQTAHDRIVIDTSANVALSAGQTAGSTVTVQGVMIGTLVAGSTG
GASENLVVDLNANATPVRVQALITELSYSNTSDEPNTTNRTLGVTIVDDVGITSDTATVT
VTVAATDDAPTLSATGTDPNFIEGGTAMDLFHTVSADTIESGQTFTELRLTITNLADGSA
EILNIDGSALALTDANTLTTATNSLSATVSVTGTTATVTLTSGTMSSAAVQTLVDAITYE
NTSEDPTNASNRVVTITALTDSGSATGSNENSATLSLASTVTVSPVNDAPVVDAVFAEAA
SQIVLGTGFADLSGLNDAAVSNLDSDDYQGGSLTIQQTSGTANGSWGVDGTLVTSDGDAV
IAAGQTVQVNGVTVGTIDPTNVGANGGTLTINFTTGSATSANVQTLLQNLTYSAPSASGT
RTFDLTLNDNDGSTNGGDQDVSGTFDILVVSSPPVIGNLDGDSFTFTEGDNATPIDVGGN
LTVSDPDDANFDQGTVTISYESGMQPEDRISVDVSGVVSLSAGLGNGSVVSVSGVTIGTV
SATGTGGAGEDLVINLTAGATHAAMQSFLSAIQYDNTSVGAPTDGNREIGVRIVGGDGAI
SDLAVITINVDPASSGGGSSGGTPAPVEIPMDVSAGDDNDTFSGTNYNDTINGGGGNDRI
TGDRGEDLLHGGKGVDTLRGGDGDDRLFLGSGNDRGVAGAGNDQMNGGGGNDMLHGGQGD
DTLRGGQGADRVYGGQGSDSIRAGQGNDTVFGGSGADRVRGDLGNDQISLGIDDDRAFGG
SGDDSLAGGDGEDTLNGGMGDDLLRGGAGRDTFIFASGRGNDRISDFNVLDDQLNLRDFS
FTDREQALAFGMQSDGDFIFSFEDGSTLTLHNISLADLNEAVFLF