Protein Info for Psest_3772 in Pseudomonas stutzeri RCH2

Annotation: ammonium transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 66 to 87 (22 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 195 to 216 (22 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 261 to 281 (21 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details amino acids 348 to 371 (24 residues), see Phobius details amino acids 384 to 406 (23 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 32 to 436 (405 residues), 477.7 bits, see alignment E=1.5e-147 PF00909: Ammonium_transp" amino acids 34 to 436 (403 residues), 397.8 bits, see alignment E=2.3e-123

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 98% identity to psa:PST_0503)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GR28 at UniProt or InterPro

Protein Sequence (438 amino acids)

>Psest_3772 ammonium transporter (Pseudomonas stutzeri RCH2)
MTLRRFAGLGALLSLISPGLALAQETTLDSGDTAWMLTATALVLFMTIPGLALFYGGMVR
SKNILSVMMQCFAVTGLMSILWMVYGYSLAFDTTGMEAGVTNFNSFVGGLDRAFLSGLTP
DSLVGAFPESVFITFQMTFAIITPALIVGAFAERMKFSAMLVFMGIWFTLVYAPIAHMVW
GGDGGLMWDWGVLDFAGGTVVHINAGIAGLVACLVLGKRKGYPTTPMAPHNLGLTLIGAA
MLWVGWFGFNAGSAVAANGTAGMAMLVTQIATAAAALGWMFAEWIGHGKPSALGIASGVV
AGLVAITPAAGTVGPMGALVIGLVSGVVCFFCATSLKRKLGYDDSLDAFGVHGVGGIVGA
LLTGIFAAPMLGGFGEVENIGLQLWIQFKGVLFTVVYTGIVTYLILKAIDLVMGLRVNEE
QETIGLDLSLHNERGYNL