Protein Info for PGA1_262p01040 in Phaeobacter inhibens DSM 17395

Annotation: periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00496: SBP_bac_5" amino acids 68 to 431 (364 residues), 304.8 bits, see alignment E=4.7e-95

Best Hits

KEGG orthology group: K02035, peptide/nickel transport system substrate-binding protein (inferred from 84% identity to sil:SPO3774)

Predicted SEED Role

"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) or Bacterial Chemotaxis (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DWG4 at UniProt or InterPro

Protein Sequence (518 amino acids)

>PGA1_262p01040 periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP) (Phaeobacter inhibens DSM 17395)
MKHFASTLAVATLTATLSTAAMAEVTIKVAYDADPVSLDPHEQLSGGTLQLSHMVFDPLV
RWTKDLQFAPRLAESWEQIDETTMRFKLRDGVTFHSGNALTSADVDWTFDRLKASPDFKG
IFAPFTDVEVVDELTFDLKTSEPYPLILHTATYIFPMDSQFYSGTTEDGKEKAELVKHGD
SFASRNLSGTGPFTVTEREQGVKVVFDRFDSYWDTASEGNVDKIILTPIKEDPTRVAALL
AGDVDFIAPVPPTDLKRVEEHDGTTLITEPGTRIITFQLNQNRVEAFKDARVRKAIDYAV
NNAGIVDRIMRGFGTVGAQASPAGYLGYDESLTPRFDVEKAKALMAEAGYADGFSVTMMA
PNNRYVNDDKIAQAVASMLAKINIKVDLQTMPKAQYWPTFDERAADMMMIGWHADTEDSA
NFHQFLTHCPDETTGNGQYNSGNYCNPEADALMAEANATTDQTKRGELLRKLEGILYADA
AFIPLHWQNLAWGARDGVHAEKIVNALNFPYFGDLKVD