Protein Info for PGA1_262p00550 in Phaeobacter inhibens DSM 17395

Annotation: putative DNA modification/repair radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 418 TIGR03916: putative DNA modification/repair radical SAM protein" amino acids 14 to 394 (381 residues), 574 bits, see alignment E=1e-176 PF04055: Radical_SAM" amino acids 71 to 202 (132 residues), 39.1 bits, see alignment E=4.5e-14

Best Hits

KEGG orthology group: None (inferred from 86% identity to jan:Jann_2067)

Predicted SEED Role

"Biotin synthase related domain containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F284 at UniProt or InterPro

Protein Sequence (418 amino acids)

>PGA1_262p00550 putative DNA modification/repair radical SAM protein (Phaeobacter inhibens DSM 17395)
MRTYIEQMTRQTLDQKLAILSDAAKYDASCASSGSTKRDSRDGKGLGSNEGTGICHAYAP
DGRCISLLKILMTNFCIYDCTYCVNRVSSNVPRARFTVDEVVKLTIEFYRRNYIEGLFLS
SGIIRSPDATMSEMVQIARKLRQEENFRGYIHLKTIPDAAPDLIAEAGLLADRLSINVEM
PSDAAVREHAPEKDPGQIRKAMGDVRLRKEAAKDRSHTGRRPPRFAPAGQSTQMIIGADG
SNDAMVLGQSTRLYSSYKLKRVYYSAFSPIPDSSAKLPLISPPLQREHRLYQADWLLRFY
DFQLDEITSVTPDGNLDLHIDPKLAWALAHREMYPLDVNRASREMLLRVPGFGVKTVNRI
LSTRRHRSLRYEDLLRIGASMKKARAFVVAGGWTPGRLTDSVDLRAQFAPPPEQLALF