Protein Info for Psest_3694 in Pseudomonas stutzeri RCH2

Annotation: Predicted acyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 transmembrane" amino acids 32 to 51 (20 residues), see Phobius details PF03279: Lip_A_acyltrans" amino acids 84 to 307 (224 residues), 32.7 bits, see alignment E=2.3e-12

Best Hits

KEGG orthology group: None (inferred from 68% identity to pfl:PFL_0473)

Predicted SEED Role

"Lysophospholipid acyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GQ87 at UniProt or InterPro

Protein Sequence (314 amino acids)

>Psest_3694 Predicted acyltransferase (Pseudomonas stutzeri RCH2)
MSEAPVPSHWAAQRERGSFALMRLTAWAVRVLGRRTMAPLLYLIVLYFYLFGRSARNSAR
QYQGYLARWSGRAELQPSTRSVYRQFMSFAEALLDKLDVWSGRVGRERLVIHDPTNLHAS
LAGPRGQLLVGSHLGNLEICRALAEIGGEVRMNVLVHTRHAEQFNRLLDQSGADNLRLIQ
VSELVPATMLQLSQRLERGEWLAIAGDRVPLHGGRTAMADFLGQAAAFPQGPWLLAGLLE
CPVNLLFCLKQDEHFHVHLEPFAERIRWRRADRDAVIAQAVQRYADRLAARCLEAPLQWF
NFYPFWNTQDPRRD