Protein Info for PGA1_262p00190 in Phaeobacter inhibens DSM 17395

Annotation: putative transporter, MFS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 45 to 68 (24 residues), see Phobius details amino acids 81 to 108 (28 residues), see Phobius details amino acids 154 to 185 (32 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 251 to 269 (19 residues), see Phobius details amino acids 281 to 297 (17 residues), see Phobius details amino acids 302 to 320 (19 residues), see Phobius details amino acids 339 to 358 (20 residues), see Phobius details amino acids 369 to 389 (21 residues), see Phobius details PF07690: MFS_1" amino acids 14 to 231 (218 residues), 57.8 bits, see alignment E=4.7e-20 amino acids 220 to 395 (176 residues), 61.3 bits, see alignment E=4.1e-21

Best Hits

KEGG orthology group: None (inferred from 68% identity to smd:Smed_5611)

Predicted SEED Role

"Probable NreB protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DW86 at UniProt or InterPro

Protein Sequence (438 amino acids)

>PGA1_262p00190 putative transporter, MFS family (Phaeobacter inhibens DSM 17395)
MLSVLANRTYRHLLAAQIIALLGTGLATVALGLLAWQIAGEQAGVVLGTALAIKMLAYVG
LAPIASALADQLPRRVMLVSLDLIRAAVALALPFVTEIWHIYGLIFLMQAASAGFTPTFQ
ATIPDVLPDETEYTRALSLSRLAYDLESLLSPMLAAALLTVVSFPVLFTGTVIGFLASAL
LVVSVPIPSPQPSSPRSIWTRTTRGIRLYFATPRLRGLLALNLVVAAASSMVIVNTVVLV
KGHFALNEPQVAIALAAFGGGSMMAALLLPRVLDHMPDRPPMLAGGALLTIGLWIGPWAD
SFGLLVVLWALLGFGFSLAQTPTGRLLRRSALPEERPALFAAQFALSHACWLLTYPLAGQ
IGARAGFDATFLLLGTLAGGGLLLAARLWRDDGGLAHQAEAATHDHPDLPADHPHLATYG
HGPNHRHPVVVDDLHPRT