Protein Info for PGA1_c36220 in Phaeobacter inhibens DSM 17395

Annotation: Invasion associated locus B (IalB) protein.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details PF06776: IalB" amino acids 111 to 186 (76 residues), 28.2 bits, see alignment E=9.2e-11

Best Hits

KEGG orthology group: None (inferred from 78% identity to sit:TM1040_3015)

Predicted SEED Role

"Mlr4354 like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E608 at UniProt or InterPro

Protein Sequence (192 amino acids)

>PGA1_c36220 Invasion associated locus B (IalB) protein. (Phaeobacter inhibens DSM 17395)
MSSGLFEVKTVLELGQMTSKLVRCIAGLCLAAMATSASAQQAESDNRVASNVDWSVFQGE
SPKECWGVSAPKETVNTRDGRVKAVRRGKIQLFVFYRPETGDKGQVTFTGGYPFAPGSTV
NLAVGDTEFELFTEGEWAWPATAADDAKIITAMKRGAQAVLTARSARGTQTKDTFSLLGF
TAAVEDAEKRCN