Protein Info for HP15_3491 in Marinobacter adhaerens HP15

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD" amino acids 29 to 210 (182 residues), 181.8 bits, see alignment E=5.6e-58 PF03602: Cons_hypoth95" amino acids 33 to 209 (177 residues), 194.2 bits, see alignment E=1.6e-61 PF05175: MTS" amino acids 74 to 156 (83 residues), 28.4 bits, see alignment E=1.2e-10

Best Hits

Swiss-Prot: 54% identical to RSMD_ECOLI: Ribosomal RNA small subunit methyltransferase D (rsmD) from Escherichia coli (strain K12)

KEGG orthology group: K08316, ribosomal RNA small subunit methyltransferase D [EC: 2.1.1.171] (inferred from 80% identity to maq:Maqu_3747)

MetaCyc: 54% identical to 16S rRNA m2G966 methyltransferase (Escherichia coli K-12 substr. MG1655)
RXN0-6515 [EC: 2.1.1.171]

Predicted SEED Role

No annotation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.1.1.171

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PFZ1 at UniProt or InterPro

Protein Sequence (216 amino acids)

>HP15_3491 conserved hypothetical protein (Marinobacter adhaerens HP15)
MARRQSASRSHQTRSPAGREAAPAGKGSGTGELRIIGGDWRSRKLRFPDAGGVRPTPART
RETLFNWLAFHLAGSDCLDLFAGSGALGLEALSRGAGQATLVDHTPALARALRDNLRLLK
SDNGEVVCSDVESYLAQRNRPPFDIVFMDPPFRQGWLEKLFPLLEQQAWIKPGGWVYMEH
ESELPPPSVPVSWQLHRQKSAGQVTYSLFRVISRPE