Protein Info for PGA1_c35940 in Phaeobacter inhibens DSM 17395

Annotation: Core-2/I-Branching enzyme.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 566 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF02485: Branch" amino acids 33 to 249 (217 residues), 59.3 bits, see alignment E=4.5e-20 PF19349: DUF5927" amino acids 267 to 566 (300 residues), 530.1 bits, see alignment E=1.5e-163

Best Hits

KEGG orthology group: None (inferred from 77% identity to sil:SPO0035)

Predicted SEED Role

"Core-2/I-branching enzyme family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E5W3 at UniProt or InterPro

Protein Sequence (566 amino acids)

>PGA1_c35940 Core-2/I-Branching enzyme. (Phaeobacter inhibens DSM 17395)
MSAVGIVMLVHTALDRAEQVARHWVAGGCPVVLHVDKKVPQATYAAFKAAFSGDPMVRFS
RRHRCEWGTWGIVAASQSASELLLATYPSVRHVFLASGSCLPLRPVSDLVDYLAARPRTD
FIESATTADVPWIVGGLDVERFTLRFPFSWKKRRYLFDRYVSLQRKLGIRRKIPDGLVPH
MGSQWWCLTRQTLSAILDDPDRPRYDRYFRKVWIPDESYYQTLARLYSGNIESRSLTLSK
FDFQGKPHNFYDDHLQLLRRSDCFVARKIWPHADRLYATFLGDRPDVMKSREPNPGKIDR
IFAKAVERRTRGRPGLYMQSRLPANGLENGITCNPYSMFQGFAELFENFEEWLTQVTGAK
VHGHLFAADGVEFADRQTLINGGLSDSAKLRDYHPKGFLTNLIWNTRGERQCFQFGPQDN
QAINWLVARDPNAQVSVISGAWAVPLFRSNKNFADLRREAARLQQIEAKHIEILRSKYVK
ARVRIWSMAEFVESPMEPIQTVLDEFGAQAQRHLNTAPTMVDLAGFGQFLQNLKNQGMHP
YLMGDFPAEQGPLNMPKTPRKPYLVQ