Protein Info for PGA1_c35830 in Phaeobacter inhibens DSM 17395

Annotation: putative flagellar basal-body rod protein FlgB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 PF00460: Flg_bb_rod" amino acids 20 to 37 (18 residues), 23 bits, see alignment (E = 3.2e-09)

Best Hits

KEGG orthology group: K02387, flagellar basal-body rod protein FlgB (inferred from 70% identity to sit:TM1040_2965)

Predicted SEED Role

"Flagellar basal-body rod protein FlgB" in subsystem Flagellum or Flagellum in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ES73 at UniProt or InterPro

Protein Sequence (129 amino acids)

>PGA1_c35830 putative flagellar basal-body rod protein FlgB (Phaeobacter inhibens DSM 17395)
MFKELNVFKIAYSMATHAGKRQALVSQNIANADTPGYNAKDIKPFKEVYAQGPRAGDMIA
SRSNHLHGASGNGMDWAVTATRGGGDPNDNTVSIETEILKGVEVKRQHDRALAIYKSSMN
VLRSSLGRN