Protein Info for PGA1_c35790 in Phaeobacter inhibens DSM 17395

Annotation: flagellar basal-body rod protein FlgF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 TIGR03506: flagellar hook-basal body protein" amino acids 6 to 120 (115 residues), 122.5 bits, see alignment E=3.4e-39 PF00460: Flg_bb_rod" amino acids 6 to 35 (30 residues), 23.8 bits, see alignment 3.5e-09 TIGR02490: flagellar basal-body rod protein FlgF" amino acids 6 to 215 (210 residues), 190.3 bits, see alignment E=3.5e-60 PF06429: Flg_bbr_C" amino acids 170 to 232 (63 residues), 55.2 bits, see alignment E=6.2e-19

Best Hits

KEGG orthology group: K02391, flagellar basal-body rod protein FlgF (inferred from 73% identity to sit:TM1040_2961)

Predicted SEED Role

"Flagellar basal-body rod protein FlgG" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E5U8 at UniProt or InterPro

Protein Sequence (238 amino acids)

>PGA1_c35790 flagellar basal-body rod protein FlgF (Phaeobacter inhibens DSM 17395)
MGDTGYTTLSRQSGLMREMRVVANNIANSATTGYRAEGVIFSEFIQSAPGQESLSMGRAN
IRNTSMAQGALTQSGGDLDLAIEGDGYFMVETPMGERLTRSGAFSTNAQGDLVTMDGHRV
LDAGRAPVFIPGDAKSIKFGADGTLSADGRALGQIGIFKPEENYQMIREDGVMFRVDGEI
EDAGDARVLQGFLEGSNVNAISQLARMVEIQRAYEMGQSFLETEDQRVRNAIKNLTKS