Protein Info for PGA1_c35780 in Phaeobacter inhibens DSM 17395

Annotation: flagellar basal-body rod protein FlgG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 TIGR03506: flagellar hook-basal body protein" amino acids 3 to 136 (134 residues), 147.8 bits, see alignment E=6.9e-47 amino acids 146 to 243 (98 residues), 108.1 bits, see alignment E=7.9e-35 TIGR02488: flagellar basal-body rod protein FlgG" amino acids 3 to 259 (257 residues), 329 bits, see alignment E=2.1e-102 PF00460: Flg_bb_rod" amino acids 4 to 33 (30 residues), 43.1 bits, see alignment 3.3e-15 PF06429: Flg_bbr_C" amino acids 183 to 259 (77 residues), 86.8 bits, see alignment E=8.5e-29

Best Hits

Swiss-Prot: 55% identical to FLGG_CAUVC: Flagellar basal-body rod protein FlgG (flgG) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K02392, flagellar basal-body rod protein FlgG (inferred from 84% identity to sil:SPO0177)

Predicted SEED Role

"Flagellar basal-body rod protein FlgG" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ES70 at UniProt or InterPro

Protein Sequence (261 amino acids)

>PGA1_c35780 flagellar basal-body rod protein FlgG (Phaeobacter inhibens DSM 17395)
MRALKIAATGMTAQQLRVETISNNLANMNTTGYNARRAEFADLHYQQVTRAGTVNASDGT
VLPTGVQVGLGVRASAISIHLAQGALSQTGNDLDVAIDGKGYLEVTLPSGQSAYTRDGAL
KRSAEGLVVTSDGFTVSPDITIPSDARNVSINADGEVYAYFDETAEGQLMGQLTLAGFAN
PKGLEALGSNLFVETEASGAATVASPGENGLGTLRQGYLEASSVDAVREVTELIEAQRGY
EMNAKVISAVDQMMGATTQVR