Protein Info for PGA1_c00350 in Phaeobacter inhibens DSM 17395

Annotation: Uncharacterized protein related to deoxyribodipyrimidine photolyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 516 PF04244: DPRP" amino acids 17 to 237 (221 residues), 283.8 bits, see alignment E=5.9e-89

Best Hits

Swiss-Prot: 60% identical to PHRB_AGRFC: (6-4) photolyase (phrB) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K06876, (no description) (inferred from 63% identity to dsh:Dshi_0599)

Predicted SEED Role

"deoxyribodipyrimidine photolyase-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EI52 at UniProt or InterPro

Protein Sequence (516 amino acids)

>PGA1_c00350 Uncharacterized protein related to deoxyribodipyrimidine photolyase (Phaeobacter inhibens DSM 17395)
MSNQTTPQDSREPGRIILILGDQLSHDLPSLQVGDPQKDRLLMAEVAEEASYVPHHKKKL
AFVLSAMRHFADELTAAGWDLKYVHLDDPDNSGSLTGELDRALEQFTVTEVLVTEPGEYR
LKEALNRWSGPARLTMLDDSRFLASHDMFRSWAEGRKQLRMEYFYRDMRRKTGLLMQGDS
PEGGKWNYDTENRKPAQNDMFMPKPMRCDPDRITQDVLELVEQRFPGNFGRLTPFWFAVT
RAAALKALDHFIDVALPLFGDYQDAMLDGEPFLYHSLLSQYINIGLLNPLEVCRSAERAY
YEGHAPLNAVEGFIRQIIGWREYMRGIYWLKMPGYTRENALGAKRDLPDFYWSGETGMAC
MAAAITQTRDEAYAHHIQRLMVTGNFAMLAGINPHQVHEWYLAVYADAYEWVEAPNVIGM
SQFADGGLLGSKPYAASGNYINKMSNYCTTCAYDVKQKTGPKACPFNPLYWDFLIRNREK
LSKNPRLMQPYRTWDRMSAEKQQEYLISAEKVLDSL